PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048331-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 342aa    MW: 37947.5 Da    PI: 4.4964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048331-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-094252245
                      T-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwq 45
                      + W++Ia++++ gRt++++k++w+
  PSME_00048331-RA  4 R-WSLIAAHLP-GRTDNEIKNYWN 25
                      4.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.197132IPR017930Myb domain
CDDcd001674.76E-7325No hitNo description
SuperFamilySSF466891.48E-7333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-12328IPR009057Homeodomain-like
PfamPF002499.1E-7426IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MINRWSLIAA HLPGRTDNEI KNYWNSSIKK KFMVRHHPSS SPTTNSQTNI PSQSDRSRNT  60
NSLFACDAFT PSQSNQPYLF ISEPYVSPNN TFNGATSEEN QLSIPNVLKL KQGQVQDQND  120
EISIDSDLSD IQLISFYQPW FDATSTHTLE SGSSHVAQGL HTCKTAESST CDQLIIEPCR  180
TTVPHPVAPA SGDYSLASTS NVVPAAFVDS SRSLIEEFKD DGDLFGHENE NLIDYSPLKA  240
TSFGWSASHS YSNAPECCRV VDLGAYTTSE PEISIVEDYE KTTHQSWLPL NSSSHFCAPD  300
GFQANDHFSD RLRYDTSLGV PCTDIDINSI QNYQLLEFGL PQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.19e-12myb domain protein 103